- Publications: Biology and astronomy publications; or all publications according to Google
- PhD Thesis: "The Rate of Supernovae in the Nearby and Distant Universe" (1999) [1.3MB PDF]
- Published computational biology software:
- Netmotsa - Network-oriented Gibbs sampling for motif detection
- Hepatitis-C project - Identifying pathways putatively active in disease infection
- cMonkey - Biclustering of mRNA expression data, constrained by biological priors (interaction networks, DNA sequence motifs, etc.)
- Inferelator - Inference of gene regulatory networks (in conjunction with cMonkey)
- MeDiChI - Model-based deconvolution of genome wide DNA binding (ChIP-chip) data